help with Trackmate

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help with Trackmate

Praveen Krishnamoorthy
Hello community,
could someone tell me how i can add a color manually to the tracks generated by TrackMate in fiji? I tried this - Set Color >> Maunal Color , but this doesn't seem to change the color of the tracks.
Thanks!
Praveen

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Re: help with Trackmate

Jean-Yves  TINEVEZ

​Hi Praveen,


In the 'Configure views' panel, you have to choose the coloring for spots and tracks to be 'manual'.


This should work

best

jy



--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: +33 7 88 17 97 69

tel: +33 1 45 68 82 18


From: [hidden email] <[hidden email]> on behalf of Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:18
To: Fiji-devel
Subject: [fiji-devel] help with Trackmate
 
Hello community,
could someone tell me how i can add a color manually to the tracks generated by TrackMate in fiji? I tried this - Set Color >> Maunal Color , but this doesn't seem to change the color of the tracks.
Thanks!
Praveen

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Re: help with Trackmate

Jean-Yves  TINEVEZ

That one:

http://fiji.sc/_images/a/a9/TrackMate_DisplayPanel.png


You have it once the tracking process is complete. 

In the 'set color by', you will find a 'manual color' option. You have to check it both for spots and tracks.


Best

jy



--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: +33 7 88 17 97 69

tel: +33 1 45 68 82 18


From: Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:24
To: Jean-Yves TINEVEZ
Subject: Re: [fiji-devel] help with Trackmate
 
Hi Jean,
Could you tell me where i can find this panel? I cant find this panel on Fiji :(
Best,
Praveen


On Fri, Oct 9, 2015 at 11:19 AM, Jean-Yves TINEVEZ <[hidden email]> wrote:

​Hi Praveen,


In the 'Configure views' panel, you have to choose the coloring for spots and tracks to be 'manual'.


This should work

best

jy



--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: <a href="tel:%2B33%207%2088%2017%2097%2069" value="&#43;33788179769" target="_blank"> +33 7 88 17 97 69

tel: <a href="tel:%2B33%201%2045%2068%2082%2018" value="&#43;33145688218" target="_blank"> +33 1 45 68 82 18


From: [hidden email] <[hidden email]> on behalf of Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:18
To: Fiji-devel
Subject: [fiji-devel] help with Trackmate
 
Hello community,
could someone tell me how i can add a color manually to the tracks generated by TrackMate in fiji? I tried this - Set Color >> Maunal Color , but this doesn't seem to change the color of the tracks.
Thanks!
Praveen

--
--
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Re: help with Trackmate

Jean-Yves  TINEVEZ


It's explained here:

http://fiji.sc/2014-06-02_-_TrackMate_v2.3.0_released


--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: +33 7 88 17 97 69

tel: +33 1 45 68 82 18


From: Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:31
To: Jean-Yves TINEVEZ
Subject: Re: [fiji-devel] help with Trackmate
 
Ok, i did that.. But now the all tracks are grey in color and i cannot change to another color. Can i change the color?

Best,
Praveen


On Fri, Oct 9, 2015 at 11:24 AM, Jean-Yves TINEVEZ <[hidden email]> wrote:

That one:

http://fiji.sc/_images/a/a9/TrackMate_DisplayPanel.png


You have it once the tracking process is complete. 

In the 'set color by', you will find a 'manual color' option. You have to check it both for spots and tracks.


Best

jy



--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: <a href="tel:%2B33%207%2088%2017%2097%2069" value="&#43;33788179769" target="_blank"> +33 7 88 17 97 69

tel: <a href="tel:%2B33%201%2045%2068%2082%2018" value="&#43;33145688218" target="_blank"> +33 1 45 68 82 18


From: Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:24
To: Jean-Yves TINEVEZ
Subject: Re: [fiji-devel] help with Trackmate
 
Hi Jean,
Could you tell me where i can find this panel? I cant find this panel on Fiji :(
Best,
Praveen


On Fri, Oct 9, 2015 at 11:19 AM, Jean-Yves TINEVEZ <[hidden email]> wrote:

​Hi Praveen,


In the 'Configure views' panel, you have to choose the coloring for spots and tracks to be 'manual'.


This should work

best

jy



--

Jean-Yves Tinevez

Imagopole - CiTech

Institut Pasteur

25-28, rue du Docteur Roux

75724 Paris cedex 15 

France

mob: <a href="tel:%2B33%207%2088%2017%2097%2069" value="&#43;33788179769" target="_blank"> +33 7 88 17 97 69

tel: <a href="tel:%2B33%201%2045%2068%2082%2018" value="&#43;33145688218" target="_blank"> +33 1 45 68 82 18


From: [hidden email] <[hidden email]> on behalf of Praveen Krishnamoorthy <[hidden email]>
Sent: Friday, October 9, 2015 11:18
To: Fiji-devel
Subject: [fiji-devel] help with Trackmate
 
Hello community,
could someone tell me how i can add a color manually to the tracks generated by TrackMate in fiji? I tried this - Set Color >> Maunal Color , but this doesn't seem to change the color of the tracks.
Thanks!
Praveen

--
--
Please avoid top-posting, and please make sure to reply-to-all!
 
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